Rapid Identification of Emerging Pathogens: Coronavirus
Identifieur interne : 001263 ( Pmc/Checkpoint ); précédent : 001262; suivant : 001264Rapid Identification of Emerging Pathogens: Coronavirus
Auteurs : Rangarajan Sampath [États-Unis] ; Steven A. Hofstadler [États-Unis] ; Lawrence B. Blyn [États-Unis] ; Mark W. Eshoo [États-Unis] ; Thomas A. Hall [États-Unis] ; Christian Massire [États-Unis] ; Harold M. Levene [États-Unis] ; James C. Hannis [États-Unis] ; Patina M. Harrell [États-Unis] ; Benjamin Neuman [États-Unis] ; Michael J. Buchmeier [États-Unis] ; Yun Jiang [États-Unis] ; Raymond Ranken [États-Unis] ; Jared J. Drader [États-Unis] ; Vivek Samant [États-Unis] ; Richard H. Griffey [États-Unis] ; John A. Mcneil [États-Unis] ; Stanley T. Crooke [États-Unis] ; David J. Ecker [États-Unis]Source :
- Emerging Infectious Diseases [ 1080-6040 ] ; 2005.
Abstract
New surveillance approach can analyze >900 polymerase chain reactions per day.
Url:
DOI: 10.3201/eid1103.040629
PubMed: 15757550
PubMed Central: 3298233
Affiliations:
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Hofstadler</name><affiliation wicri:level="2"><nlm:aff id="aff1">Ibis Therapeutics, Carlsbad, California, USA</nlm:aff><country xml:lang="fr">États-Unis</country><wicri:regionArea>Ibis Therapeutics, Carlsbad, California</wicri:regionArea><placeName><region type="state">Californie</region></placeName></affiliation></author><author><name sortKey="Blyn, Lawrence B" sort="Blyn, Lawrence B" uniqKey="Blyn L" first="Lawrence B." last="Blyn">Lawrence B. Blyn</name><affiliation wicri:level="2"><nlm:aff id="aff1">Ibis Therapeutics, Carlsbad, California, USA</nlm:aff><country xml:lang="fr">États-Unis</country><wicri:regionArea>Ibis Therapeutics, Carlsbad, California</wicri:regionArea><placeName><region type="state">Californie</region></placeName></affiliation></author><author><name sortKey="Eshoo, Mark W" sort="Eshoo, Mark W" uniqKey="Eshoo M" first="Mark W." last="Eshoo">Mark W. 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Hall</name><affiliation wicri:level="2"><nlm:aff id="aff1">Ibis Therapeutics, Carlsbad, California, USA</nlm:aff><country xml:lang="fr">États-Unis</country><wicri:regionArea>Ibis Therapeutics, Carlsbad, California</wicri:regionArea><placeName><region type="state">Californie</region></placeName></affiliation></author><author><name sortKey="Massire, Christian" sort="Massire, Christian" uniqKey="Massire C" first="Christian" last="Massire">Christian Massire</name><affiliation wicri:level="2"><nlm:aff id="aff1">Ibis Therapeutics, Carlsbad, California, USA</nlm:aff><country xml:lang="fr">États-Unis</country><wicri:regionArea>Ibis Therapeutics, Carlsbad, California</wicri:regionArea><placeName><region type="state">Californie</region></placeName></affiliation></author><author><name sortKey="Levene, Harold M" sort="Levene, Harold M" uniqKey="Levene H" first="Harold M." last="Levene">Harold M. Levene</name><affiliation wicri:level="2"><nlm:aff id="aff1">Ibis Therapeutics, Carlsbad, California, USA</nlm:aff><country xml:lang="fr">États-Unis</country><wicri:regionArea>Ibis Therapeutics, Carlsbad, California</wicri:regionArea><placeName><region type="state">Californie</region></placeName></affiliation></author><author><name sortKey="Hannis, James C" sort="Hannis, James C" uniqKey="Hannis J" first="James C." last="Hannis">James C. Hannis</name><affiliation wicri:level="2"><nlm:aff id="aff1">Ibis Therapeutics, Carlsbad, California, USA</nlm:aff><country xml:lang="fr">États-Unis</country><wicri:regionArea>Ibis Therapeutics, Carlsbad, California</wicri:regionArea><placeName><region type="state">Californie</region></placeName></affiliation></author><author><name sortKey="Harrell, Patina M" sort="Harrell, Patina M" uniqKey="Harrell P" first="Patina M." last="Harrell">Patina M. Harrell</name><affiliation wicri:level="2"><nlm:aff id="aff1">Ibis Therapeutics, Carlsbad, California, USA</nlm:aff><country xml:lang="fr">États-Unis</country><wicri:regionArea>Ibis Therapeutics, Carlsbad, California</wicri:regionArea><placeName><region type="state">Californie</region></placeName></affiliation></author><author><name sortKey="Neuman, Benjamin" sort="Neuman, Benjamin" uniqKey="Neuman B" first="Benjamin" last="Neuman">Benjamin Neuman</name><affiliation wicri:level="2"><nlm:aff id="aff2">The Scripps Research Institute, La Jolla, California, USA</nlm:aff><country xml:lang="fr">États-Unis</country><wicri:regionArea>The Scripps Research Institute, La Jolla, California</wicri:regionArea><placeName><region type="state">Californie</region></placeName></affiliation></author><author><name sortKey="Buchmeier, Michael J" sort="Buchmeier, Michael J" uniqKey="Buchmeier M" first="Michael J." last="Buchmeier">Michael J. Buchmeier</name><affiliation wicri:level="2"><nlm:aff id="aff2">The Scripps Research Institute, La Jolla, California, USA</nlm:aff><country xml:lang="fr">États-Unis</country><wicri:regionArea>The Scripps Research Institute, La Jolla, California</wicri:regionArea><placeName><region type="state">Californie</region></placeName></affiliation></author><author><name sortKey="Jiang, Yun" sort="Jiang, Yun" uniqKey="Jiang Y" first="Yun" last="Jiang">Yun Jiang</name><affiliation wicri:level="2"><nlm:aff id="aff1">Ibis Therapeutics, Carlsbad, California, USA</nlm:aff><country xml:lang="fr">États-Unis</country><wicri:regionArea>Ibis Therapeutics, Carlsbad, California</wicri:regionArea><placeName><region type="state">Californie</region></placeName></affiliation></author><author><name sortKey="Ranken, Raymond" sort="Ranken, Raymond" uniqKey="Ranken R" first="Raymond" last="Ranken">Raymond Ranken</name><affiliation wicri:level="2"><nlm:aff id="aff1">Ibis Therapeutics, Carlsbad, California, USA</nlm:aff><country xml:lang="fr">États-Unis</country><wicri:regionArea>Ibis Therapeutics, Carlsbad, California</wicri:regionArea><placeName><region type="state">Californie</region></placeName></affiliation></author><author><name sortKey="Drader, Jared J" sort="Drader, Jared J" uniqKey="Drader J" first="Jared J." last="Drader">Jared J. Drader</name><affiliation wicri:level="2"><nlm:aff id="aff1">Ibis Therapeutics, Carlsbad, California, USA</nlm:aff><country xml:lang="fr">États-Unis</country><wicri:regionArea>Ibis Therapeutics, Carlsbad, California</wicri:regionArea><placeName><region type="state">Californie</region></placeName></affiliation></author><author><name sortKey="Samant, Vivek" sort="Samant, Vivek" uniqKey="Samant V" first="Vivek" last="Samant">Vivek Samant</name><affiliation wicri:level="2"><nlm:aff id="aff1">Ibis Therapeutics, Carlsbad, California, USA</nlm:aff><country xml:lang="fr">États-Unis</country><wicri:regionArea>Ibis Therapeutics, Carlsbad, California</wicri:regionArea><placeName><region type="state">Californie</region></placeName></affiliation></author><author><name sortKey="Griffey, Richard H" sort="Griffey, Richard H" uniqKey="Griffey R" first="Richard H." last="Griffey">Richard H. Griffey</name><affiliation wicri:level="2"><nlm:aff id="aff1">Ibis Therapeutics, Carlsbad, California, USA</nlm:aff><country xml:lang="fr">États-Unis</country><wicri:regionArea>Ibis Therapeutics, Carlsbad, California</wicri:regionArea><placeName><region type="state">Californie</region></placeName></affiliation></author><author><name sortKey="Mcneil, John A" sort="Mcneil, John A" uniqKey="Mcneil J" first="John A." last="Mcneil">John A. Mcneil</name><affiliation wicri:level="2"><nlm:aff id="aff1">Ibis Therapeutics, Carlsbad, California, USA</nlm:aff><country xml:lang="fr">États-Unis</country><wicri:regionArea>Ibis Therapeutics, Carlsbad, California</wicri:regionArea><placeName><region type="state">Californie</region></placeName></affiliation></author><author><name sortKey="Crooke, Stanley T" sort="Crooke, Stanley T" uniqKey="Crooke S" first="Stanley T." last="Crooke">Stanley T. Crooke</name><affiliation wicri:level="2"><nlm:aff id="aff1">Ibis Therapeutics, Carlsbad, California, USA</nlm:aff><country xml:lang="fr">États-Unis</country><wicri:regionArea>Ibis Therapeutics, Carlsbad, California</wicri:regionArea><placeName><region type="state">Californie</region></placeName></affiliation></author><author><name sortKey="Ecker, David J" sort="Ecker, David J" uniqKey="Ecker D" first="David J." last="Ecker">David J. Ecker</name><affiliation wicri:level="2"><nlm:aff id="aff1">Ibis Therapeutics, Carlsbad, California, USA</nlm:aff><country xml:lang="fr">États-Unis</country><wicri:regionArea>Ibis Therapeutics, Carlsbad, California</wicri:regionArea><placeName><region type="state">Californie</region></placeName></affiliation></author></analytic><series><title level="j">Emerging Infectious Diseases</title><idno type="ISSN">1080-6040</idno><idno type="eISSN">1080-6059</idno><imprint><date when="2005">2005</date></imprint></series></biblStruct></sourceDesc></fileDesc><profileDesc><textClass></textClass></profileDesc></teiHeader><front><div type="abstract" xml:lang="en"><p>New surveillance approach can analyze >900 polymerase chain reactions per day.</p></div></front><back><div1 type="bibliography"><listBibl><biblStruct></biblStruct><biblStruct></biblStruct><biblStruct></biblStruct><biblStruct></biblStruct><biblStruct></biblStruct><biblStruct></biblStruct><biblStruct></biblStruct><biblStruct></biblStruct><biblStruct></biblStruct><biblStruct></biblStruct><biblStruct></biblStruct><biblStruct></biblStruct><biblStruct></biblStruct><biblStruct></biblStruct><biblStruct></biblStruct><biblStruct></biblStruct><biblStruct></biblStruct><biblStruct></biblStruct><biblStruct></biblStruct><biblStruct></biblStruct><biblStruct></biblStruct><biblStruct></biblStruct><biblStruct></biblStruct><biblStruct></biblStruct><biblStruct></biblStruct><biblStruct></biblStruct><biblStruct></biblStruct><biblStruct></biblStruct><biblStruct></biblStruct></listBibl></div1></back></TEI><pmc article-type="research-article"><pmc-dir>properties open_access</pmc-dir>
<front><journal-meta><journal-id journal-id-type="nlm-ta">Emerg Infect Dis</journal-id><journal-id journal-id-type="iso-abbrev">Emerging Infect. Dis</journal-id><journal-id journal-id-type="publisher-id">EID</journal-id><journal-title-group><journal-title>Emerging Infectious Diseases</journal-title></journal-title-group><issn pub-type="ppub">1080-6040</issn><issn pub-type="epub">1080-6059</issn><publisher><publisher-name>Centers for Disease Control and Prevention</publisher-name></publisher></journal-meta><article-meta><article-id pub-id-type="pmid">15757550</article-id><article-id pub-id-type="pmc">3298233</article-id><article-id pub-id-type="publisher-id">04-0629</article-id><article-id pub-id-type="doi">10.3201/eid1103.040629</article-id><article-categories><subj-group subj-group-type="heading"><subject>Research</subject></subj-group><subj-group subj-group-type="article-type"><subject>Research</subject></subj-group></article-categories><title-group><article-title>Rapid Identification of Emerging Pathogens: Coronavirus</article-title><alt-title alt-title-type="running-head">Rapid Identification of Emerging Pathogens</alt-title></title-group><contrib-group><contrib contrib-type="author" corresp="yes"><name><surname>Sampath</surname><given-names>Rangarajan</given-names></name><xref ref-type="aff" rid="aff1">*</xref></contrib><contrib contrib-type="author"><name><surname>Hofstadler</surname><given-names>Steven A.</given-names></name><xref ref-type="aff" rid="aff1">*</xref></contrib><contrib contrib-type="author"><name><surname>Blyn</surname><given-names>Lawrence B.</given-names></name><xref ref-type="aff" rid="aff1">*</xref></contrib><contrib contrib-type="author"><name><surname>Eshoo</surname><given-names>Mark W.</given-names></name><xref ref-type="aff" rid="aff1">*</xref></contrib><contrib contrib-type="author"><name><surname>Hall</surname><given-names>Thomas A.</given-names></name><xref ref-type="aff" rid="aff1">*</xref></contrib><contrib contrib-type="author"><name><surname>Massire</surname><given-names>Christian</given-names></name><xref ref-type="aff" rid="aff1">*</xref></contrib><contrib contrib-type="author"><name><surname>Levene</surname><given-names>Harold M.</given-names></name><xref ref-type="aff" rid="aff1">*</xref></contrib><contrib contrib-type="author"><name><surname>Hannis</surname><given-names>James C.</given-names></name><xref ref-type="aff" rid="aff1">*</xref></contrib><contrib contrib-type="author"><name><surname>Harrell</surname><given-names>Patina M.</given-names></name><xref ref-type="aff" rid="aff1">*</xref></contrib><contrib contrib-type="author"><name><surname>Neuman</surname><given-names>Benjamin</given-names></name><xref ref-type="aff" rid="aff2">†</xref></contrib><contrib contrib-type="author"><name><surname>Buchmeier</surname><given-names>Michael J.</given-names></name><xref ref-type="aff" rid="aff2">†</xref></contrib><contrib contrib-type="author"><name><surname>Jiang</surname><given-names>Yun</given-names></name><xref ref-type="aff" rid="aff1">*</xref></contrib><contrib contrib-type="author"><name><surname>Ranken</surname><given-names>Raymond</given-names></name><xref ref-type="aff" rid="aff1">*</xref></contrib><contrib contrib-type="author"><name><surname>Drader</surname><given-names>Jared J.</given-names></name><xref ref-type="aff" rid="aff1">*</xref></contrib><contrib contrib-type="author"><name><surname>Samant</surname><given-names>Vivek</given-names></name><xref ref-type="aff" rid="aff1">*</xref></contrib><contrib contrib-type="author"><name><surname>Griffey</surname><given-names>Richard H.</given-names></name><xref ref-type="aff" rid="aff1">*</xref></contrib><contrib contrib-type="author"><name><surname>McNeil</surname><given-names>John A.</given-names></name><xref ref-type="aff" rid="aff1">*</xref></contrib><contrib contrib-type="author"><name><surname>Crooke</surname><given-names>Stanley T.</given-names></name><xref ref-type="aff" rid="aff1">*</xref></contrib><contrib contrib-type="author"><name><surname>Ecker</surname><given-names>David J.</given-names></name><xref ref-type="aff" rid="aff1">*</xref></contrib><aff id="aff1"><label>*</label>Ibis Therapeutics, Carlsbad, California, USA</aff><aff id="aff2"><label>†</label>The Scripps Research Institute, La Jolla, California, USA</aff></contrib-group><author-notes><corresp id="cor1">Address for correspondence: Rangarajan Sampath, Ibis Therapeutics, 1891 Rutherford Ct., Carlsbad, CA 92008, USA; fax: 760-603-4653; email: <email xlink:href="rsampath@isisph.com">rsampath@isisph.com</email></corresp></author-notes><pub-date pub-type="ppub"><month>3</month><year>2005</year></pub-date><volume>11</volume><issue>3</issue><fpage>373</fpage><lpage>379</lpage><abstract abstract-type="toc"><p>New surveillance approach can analyze >900 polymerase chain reactions per day.</p></abstract><abstract><p>We describe a new approach for infectious disease surveillance that facilitates rapid identification of known and emerging pathogens. The process uses broad-range polymerase chain reaction (PCR) to amplify nucleic acid targets from large groupings of organisms, electrospray ionization mass spectrometry for accurate mass measurements of PCR products, and base composition signature analysis to identify organisms in a sample. We demonstrate this principle by using 14 isolates of 9 diverse <italic>Coronavirus</italic> spp., including the severe acute respiratory syndrome–associated coronavirus (SARS-CoV). We show that this method could identify and distinguish between SARS and other known CoV, including the human CoV 229E and OC43, individually and in a mixture of all 3 human viruses. The sensitivity of detection, measured by using titered SARS-CoV spiked into human serum, was ≈1 PFU/mL. This approach, applicable to the surveillance of bacterial, viral, fungal, or protozoal pathogens, is capable of automated analysis of >900 PCR reactions per day.</p></abstract><kwd-group kwd-group-type="author"><title>Keywords: </title><kwd>PCR</kwd><kwd>molecular epidemiology</kwd><kwd>emerging pathogens</kwd><kwd>SARS virus</kwd><kwd>infectious disease surveillance</kwd><kwd>ESI mass spectrometry</kwd><kwd>research</kwd></kwd-group></article-meta></front></pmc><affiliations><list><country><li>États-Unis</li></country><region><li>Californie</li></region></list><tree><country name="États-Unis"><region name="Californie"><name sortKey="Sampath, Rangarajan" sort="Sampath, Rangarajan" uniqKey="Sampath R" first="Rangarajan" last="Sampath">Rangarajan Sampath</name></region><name sortKey="Blyn, Lawrence B" sort="Blyn, Lawrence B" uniqKey="Blyn L" first="Lawrence B." last="Blyn">Lawrence B. Blyn</name><name sortKey="Buchmeier, Michael J" sort="Buchmeier, Michael J" uniqKey="Buchmeier M" first="Michael J." last="Buchmeier">Michael J. Buchmeier</name><name sortKey="Crooke, Stanley T" sort="Crooke, Stanley T" uniqKey="Crooke S" first="Stanley T." last="Crooke">Stanley T. Crooke</name><name sortKey="Drader, Jared J" sort="Drader, Jared J" uniqKey="Drader J" first="Jared J." last="Drader">Jared J. Drader</name><name sortKey="Ecker, David J" sort="Ecker, David J" uniqKey="Ecker D" first="David J." last="Ecker">David J. Ecker</name><name sortKey="Eshoo, Mark W" sort="Eshoo, Mark W" uniqKey="Eshoo M" first="Mark W." last="Eshoo">Mark W. Eshoo</name><name sortKey="Griffey, Richard H" sort="Griffey, Richard H" uniqKey="Griffey R" first="Richard H." last="Griffey">Richard H. Griffey</name><name sortKey="Hall, Thomas A" sort="Hall, Thomas A" uniqKey="Hall T" first="Thomas A." last="Hall">Thomas A. Hall</name><name sortKey="Hannis, James C" sort="Hannis, James C" uniqKey="Hannis J" first="James C." last="Hannis">James C. Hannis</name><name sortKey="Harrell, Patina M" sort="Harrell, Patina M" uniqKey="Harrell P" first="Patina M." last="Harrell">Patina M. Harrell</name><name sortKey="Hofstadler, Steven A" sort="Hofstadler, Steven A" uniqKey="Hofstadler S" first="Steven A." last="Hofstadler">Steven A. Hofstadler</name><name sortKey="Jiang, Yun" sort="Jiang, Yun" uniqKey="Jiang Y" first="Yun" last="Jiang">Yun Jiang</name><name sortKey="Levene, Harold M" sort="Levene, Harold M" uniqKey="Levene H" first="Harold M." last="Levene">Harold M. Levene</name><name sortKey="Massire, Christian" sort="Massire, Christian" uniqKey="Massire C" first="Christian" last="Massire">Christian Massire</name><name sortKey="Mcneil, John A" sort="Mcneil, John A" uniqKey="Mcneil J" first="John A." last="Mcneil">John A. Mcneil</name><name sortKey="Neuman, Benjamin" sort="Neuman, Benjamin" uniqKey="Neuman B" first="Benjamin" last="Neuman">Benjamin Neuman</name><name sortKey="Ranken, Raymond" sort="Ranken, Raymond" uniqKey="Ranken R" first="Raymond" last="Ranken">Raymond Ranken</name><name sortKey="Samant, Vivek" sort="Samant, Vivek" uniqKey="Samant V" first="Vivek" last="Samant">Vivek Samant</name></country></tree></affiliations></record>Pour manipuler ce document sous Unix (Dilib)
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